10971 - 10973 |
Tribute to William A. Eaton Schuler B, Szabo A, Wolynes PG |
10974 - 10980 |
Autobiography of William A. Eaton Eaton WA |
10989 - 10995 |
Evolved Minimal Frustration in Multifunctional Biomolecules Roder K, Wales DJ |
10996 - 11001 |
Mapping Intrachannel Diffusive Dynamics of Interacting Molecules onto a Two-Site Model: Crossover in Flux Concentration Dependence Berezhkovskii AM, Bezrukov SM |
11002 - 11013 |
Mechanochemical Model of the Power Stroke of the Single-Headed Motor Protein KIF1A Liu F, Ji Q, Wang HJ, Wang J |
11014 - 11022 |
Solvation Layer of Antifreeze Proteins Analyzed with a Markov State Model Wellig S, Hamm P |
11023 - 11029 |
Ultrafast Hydrogen-Bonding Dynamics in Amyloid Fibrils Pazos IM, Ma JQ, Mukherjee D, Gai F |
11030 - 11038 |
Manipulating the Folding Landscape of a Multidomain Protein Kantaev R, Riven I, Goldenzweig A, Barak Y, Dym O, Peleg Y, Albeck S, Fleishman SJ, Haran G |
11039 - 11047 |
Switching Protein Conformational Substates by Protonation and Mutation Narayan A, Naganathan AN |
11048 - 11057 |
Kinetic Study of Ligand Binding and Conformational Changes in Inducible Nitric Oxide Synthase Horn M, Nienhaus K, Nienhaus GU |
11058 - 11071 |
Protein Folding Cooperativity and Thermodynamic Barriers of the Simplest beta-Sheet Fold: A Survey of WW Domains Iglesias-Bexiga M, Szczepaniak M, de Medina CS, Cobos ES, Godoy-Ruiz R, Martinez JC, Munoz V, Luque I |
11072 - 11082 |
Disorder at the Tips of a Disease-Relevant A beta 42 Amyloid Fibril: A Molecular Dynamics Study Ilie IM, Caflisch A |
11083 - 11094 |
Effect of Mutations on the Global and Site-Specific Stability and Folding of an Elementary Protein Structural Motif Lai JK, Kubelka GS, Kubelka J |
11095 - 11099 |
Testing Kinetic Identities Involving Transition-Path Properties Using Single-Molecule Folding Trajectories Neupane K, Hoffer NQ, Woodside MT |
11100 - 11107 |
Peroxynitrite Detoxification by Human Haptoglobin:Hemoglobin Complexes: A Comparative Study Ascenzi P, Coletta M |
11108 - 11114 |
Mechanism of Folding and Binding of the N-Terminal SH2 Domain from SHP2 Bonetti D, Troilo F, Toto A, Travaglini-Allocatelli C, Brunori M, Gianni S |
11115 - 11125 |
AWSEM-IDP: A Coarse-Grained Force Field for Intrinsically Disordered Proteins Wu H, Wolynes PG, Papoian GA |
11126 - 11136 |
Accurate Protein-Folding Transition-Path Statistics from a Simple Free-Energy Landscape Jacobs WM, Shakhnovich EI |
11137 - 11146 |
Calmodulin (CaM) Activates PI3K alpha by Targeting the "Soft" CaM-Binding Motifs in Both the nSH2 and cSH2 Domains of p85 alpha Zhang MZ, Li ZG, Wang GQ, Jang H, Sacks DB, Zhang J, Gaponenko V, Nussinov R |
11147 - 11154 |
Instrumental Effects in the Dynamics of an Ultrafast Folding Protein under Mechanical Force De Sancho D, Schonfelder J, Best RB, Perez-Jimenez R, Munoz V |
11155 - 11165 |
Combined Force Ramp and Equilibrium High-Resolution Investigations Reveal Multipath Heterogeneous Unfolding of Protein G Izadi D, Chen YJ, Whitmore ML, Slivka JD, Ching K, Lapidus LJ, Comstock MJ |
11166 - 11173 |
Folding Mechanism of the SH3 Domain from Grb2 Troilo F, Bonetti D, Camilloni C, Toto A, Longhi S, Brunori M, Gianni S |
11174 - 11185 |
Monte Carlo Sampling of Protein Folding by Combining an All-Atom Physics-Based Model with a Native State Bias Wang Y, Tian PF, Boomsma W, Lindorff-Larsen K |
11186 - 11194 |
Effect of Memory and Active Forces on Transition Path Time Distributions Carlon E, Orland H, Sakaue T, Vanderzande C |
11195 - 11205 |
Interface Residues That Drive Allosteric Transitions Also Control the Assembly of L-Lactate Dehydrogenase Chen J, Thirumalai D |
11206 - 11217 |
Measuring Solvent Hydrogen Exchange Rates by Multifrequency Excitation N-15 CEST: Application to Protein Phase Separation Yuwen T, Bah A, Brady JP, Ferrage F, Bouvignies G, Kay LE |
11218 - 11227 |
RNA as a Complex Polymer with Coupled Dynamics of Ions and Water in the Outer Solvation Sphere Lammert H, Wang AL, Mohanty U, Onuchic JN |
11228 - 11239 |
Complex Folding Landscape of Apomyoglobin at Acidic pH Revealed by Ultrafast Kinetic Analysis of Core Mutants Mizukami T, Xu M, Fazlieva R, Bychkova VE, Roder H |
11240 - 11250 |
Reversible Interacting-Particle Reaction Dynamics Frohner C, Noe F |
11251 - 11261 |
Mapping an Equilibrium Folding Intermediate of the Cytolytic Pore Toxin ClyA with Single-Molecule FRET Dingfelder F, Benke S, Nettels D, Schuler B |
11262 - 11270 |
Atomistic Modeling of Intrinsically Disordered Proteins Under Polyethylene Glycol Crowding: Quantitative Comparison with Experimental Data and Implication of Protein-Crowder Attraction Nguemaha V, Qin SB, Zhou HX |
11271 - 11278 |
Decorrelating Kinetic and Relaxation Parameters in Exchange Saturation Transfer NMR: A Case Study of N-Terminal Huntingtin Peptides Binding to Unilamellar Lipid Vesicles Ceccon A, Clore GM, Tugarinov V |
11279 - 11288 |
Frictional Effects on RNA Folding: Speed Limit and Kramers Turnover Hori N, Denesyuk NA, Thirumalai D |
11289 - 11294 |
Geometrical Description of Protein Structural Motifs Kozak JJ, Gray HB, Wittung-Stafshede P |
11295 - 11301 |
On the Natural Structure of Amino Acid Patterns in Families of Protein Sequences Turjanski P, Ferreiro DU |
11302 - 11310 |
Understanding the Twisted Structure of Amyloid Fibrils via Molecular Simulations Lu L, Deng YX, Li XJ, Li H, Karniadakis GE |
11311 - 11325 |
Molecular Dynamics Investigation of the Ternary Bilayer Formed by Saturated Phosphotidylcholine, Sphingomyelin, and Cholesterol Smith AK, Klimov DK |
11326 - 11337 |
Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography Lolli G, Raboni S, Pasqualetto E, Benoni R, Campanini B, Ronda L, Mozzarelli A, Bettati S, Battistutta R |
11338 - 11354 |
Theory of Diffusion-Influenced Reaction Networks Gopich IV, Szabo A |
11355 - 11362 |
Peptide and Protein Structure Prediction with a Simplified Continuum Solvent Model Steinbach PJ |
11363 - 11372 |
How the Conformations of an Internal Junction Contribute to Fold an RNA Domain Chen YL, Sutton JL, Pollack L |
11373 - 11380 |
Nucleotide-Dependent Dimer Association and Dissociation of the Chaperone Hsp90 Tych KM, Jahn M, Gegenfurtner F, Hechtl VK, Buchner J, Hugel T, Rief M |
11381 - 11389 |
Microviscosity in E-coli Cells from Time-Resolved Linear Dichroism Measurements Chen EF, Esquerra RM, Melendez PA, Chandrasekaran SS, Kliger DS |
11390 - 11399 |
Effect of Surfactants on Surface-Induced Denaturation of Proteins: Evidence of an Orientation-Dependent Mechanism Arsiccio A, McCarty J, Pisano R, Shea JE |
11400 - 11413 |
Transition Path Times in Non-Markovian Activated Rate Processes Medina E, Satija R, Makarov DE |
11414 - 11430 |
Surveying the Energy Landscapes of A beta Fibril Polymorphism Chen MC, Schafer NP, Wolynes PG |
11431 - 11439 |
Adiabatic Ligand Binding in Heme Proteins: Ultrafast Kinetics of Methionine Rebinding in Ferrous Cytochrome c Benabbas A, Champion PM |
11440 - 11449 |
Atomic-Level Description of Protein Folding inside the GroEL Cavity Piana S, Shaw DE |
11450 - 11459 |
Stability Effects of Protein Mutations: The Role of Long-Range Contacts Bigman LS, Levy Y |
11460 - 11467 |
Occupancies in the DNA-Binding Pathways of Intrinsically Disordered Helix-Loop-Helix Leucine-Zipper Proteins Vancraenenbroeck R, Hofmann H |
11468 - 11477 |
Dynamics of Structural Elements of GB1 beta-Hairpin Revealed by Tryptophan-Cysteine Contact Formation Experiments Soranno A, Cabassi F, Orselli ME, Cellmer T, Gori A, Longhi R, Buscaglia M |
11478 - 11487 |
Origin of Internal Friction in Disordered Proteins Depends on Solvent Quality Zheng WW, Hofmann H, Schuler B, Best RB |
11488 - 11496 |
Dynamics of Quaternary Structure Transitions in R-State Carbonmonoxyhemoglobin Unveiled in Time-Resolved X-ray Scattering Patterns Following a Temperature Jump Cho HS, Schotte F, Stadnytskyi V, DiChiara A, Henning R, Anfinrud P |
11497 - 11507 |
The Sensitivity of Computational Protein Folding to Contact Map Perturbations: The Case of Ubiquitin Folding and Function Terse VL, Gosavi S |
11508 - 11518 |
Deprotonation of a Single Amino Acid Residue Induces Significant Stability in an alpha-Helical Heteropeptide Jas GS, Kuczera K |
11519 - 11534 |
Static Kinks or Flexible Hinges: Multiple Conformations of Bent DNA Bound to Integration Host Factor Revealed by Fluorescence Lifetime Measurements Connolly M, Arra A, Zvoda V, Steinbach PJ, Rice PA, Ansari A |
11535 - 11545 |
Amyloid Fibril Design: Limiting Structural Polymorphism in Alzheimer's A beta Protofilaments Tywoniuk B, Yuan Y, McCartan S, Szydlowska BM, Tofoleanu F, Brooks BR, Buchete NV |
11546 - 11553 |
Tracking DNA Synthesis with Single-Molecule Strand Displacement Wickersham CE, Lipman EA |
11554 - 11560 |
Kinetics of Transient Protein Complexes Determined via Diffusion-Independent Microfluidic Mixing and Fluorescence Stoichiometry Hellenkamp B, Thurn J, Stadlmeier M, Hugel T |
11561 - 11570 |
Kinetic Pathway of Torsional DNA Buckling Dittmore A, Silver J, Neuman KC |
11571 - 11578 |
Calculating Kinetic Rates and Membrane Permeability from Biased Simulations Badaoui M, Kells A, Molteni C, Dickson CJ, Hornak V, Rosta E |
11579 - 11590 |
Theoretical Simulation of Red Cell Sickling Upon Deoxygenation Based on the Physical Chemistry of Sickle Hemoglobin Fiber Formation Dunkelberger EB, Metaferia B, Cellmer T, Henry ER |
11591 - 11597 |
Water, Ions, and Hemoglobin: Effects on Allostery and Polymerization Rotter MA, Jiang J, Ferrone SM, Ferrone FA |
11598 - 11615 |
Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET Ingargiola A, Weiss S, Lerner E |
11616 - 11625 |
Protein Knotting by Active Threading of Nascent Polypeptide Chain Exiting from the Ribosome Exit Channel Dabrowski-Tumanski P, Piejko M, Niewieczerzal S, Stasiak A, Sulkowska JI |
11626 - 11639 |
Dispersion Correction Alleviates Dye Stacking of Single-Stranded DNA and RNA in Simulations of Single-Molecule Fluorescence Experiments Grotz KK, Nueesch MF, Holmstrom ED, Heinz M, Stelzl LS, Schuler B, Hummer G |
11640 - 11648 |
Heterogeneity in the Folding of Villin Headpiece Subdomain HP36 Nagarajan S, Xiao SF, Raleigh DP, Dyer RB |
11649 - 11661 |
Cold-Adaptation Signatures in the Ligand Rebinding Kinetics to the Truncated Hemoglobin of the Antarctic Bacterium Pseudoalteromonas haloplanktis TAC125 Boubeta FM, Boechi L, Estrin D, Patrizi B, Di Donato M, Iagatti A, Giordano D, Verde C, Bruno S, Abbruzzetti S, Viappiani C |
11662 - 11676 |
Prediction of Misfolding-Specific Epitopes in SOD1 Using Collective Coordinates Peng XB, Cashman NR, Plotkin SS |
11677 - 11694 |
Complete Kinetic Theory of FRET Eilert T, Kallis E, Nagy J, Rocker C, Michaelis J |
11695 - 11701 |
Heterogeneous Solvation in Distinctive Protein-Protein Interfaces Revealed by Molecular Dynamics Simulations Ricci CG, McCammon JA |
11702 - 11720 |
Three-Color Single-Molecule FRET and Fluorescence Lifetime Analysis of Fast Protein Folding Yoo J, Louis JM, Gopich IV, Chung HS |
11721 - 11730 |
Statistical Mechanics of Globular Oligomer Formation by Protein Molecules Dear AJ, Saric A, Michaels TCT, Dobson CM, Knowles TPJ |
11731 - 11742 |
Temperature-Dependent Nuclear Spin Relaxation Due to Paramagnetic Dopants Below 30 K: Relevance to DNP-Enhanced Magnetic Resonance Imaging Chen HY, Tycko R |
11743 - 11761 |
DNA Solvation Dynamics Mukherjee S, Mondal S, Acharya S, Bagchi B |
11762 - 11770 |
Cell Volume Controls Protein Stability and Compactness of the Unfolded State Wang YH, Sukenik S, Davis CM, Gruebele M |
11771 - 11783 |
Modeling the Self-Assembly of Protein Complexes through a Rigid-Body Rotational Reaction-Diffusion Algorithm Johnson ME |
11784 - 11791 |
Helical Polyampholyte Sequences Have Unique Thermodynamic Properties Batchelor M, Paci E |
11792 - 11799 |
Interrupted Pressure-Jump NMR Experiments Reveal Resonances of On-Pathway Protein Folding Intermediate Charlier C, Courtney JM, Anfinrud P, Bax A |
11800 - 11806 |
The Effect of Electrostatic Interactions on the Folding Kinetics of a 3-alpha-Helical Bundle Protein Family Yrazu FM, Pinamonti G, Clementi C |
11807 - 11816 |
CATS: A Tool for Clustering the Ensemble of Intrinsically Disordered Peptides on a Flat Energy Landscape Ezerski JC, Cheung MS |