화학공학소재연구정보센터

Journal of Physical Chemistry B

Journal of Physical Chemistry B, Vol.122, No.49 Entire volume, number list
ISSN: 1520-6106 (Print) 

In this Issue (81 articles)

10971 - 10973 Tribute to William A. Eaton
Schuler B, Szabo A, Wolynes PG
10974 - 10980 Autobiography of William A. Eaton
Eaton WA
10989 - 10995 Evolved Minimal Frustration in Multifunctional Biomolecules
Roder K, Wales DJ
10996 - 11001 Mapping Intrachannel Diffusive Dynamics of Interacting Molecules onto a Two-Site Model: Crossover in Flux Concentration Dependence
Berezhkovskii AM, Bezrukov SM
11002 - 11013 Mechanochemical Model of the Power Stroke of the Single-Headed Motor Protein KIF1A
Liu F, Ji Q, Wang HJ, Wang J
11014 - 11022 Solvation Layer of Antifreeze Proteins Analyzed with a Markov State Model
Wellig S, Hamm P
11023 - 11029 Ultrafast Hydrogen-Bonding Dynamics in Amyloid Fibrils
Pazos IM, Ma JQ, Mukherjee D, Gai F
11030 - 11038 Manipulating the Folding Landscape of a Multidomain Protein
Kantaev R, Riven I, Goldenzweig A, Barak Y, Dym O, Peleg Y, Albeck S, Fleishman SJ, Haran G
11039 - 11047 Switching Protein Conformational Substates by Protonation and Mutation
Narayan A, Naganathan AN
11048 - 11057 Kinetic Study of Ligand Binding and Conformational Changes in Inducible Nitric Oxide Synthase
Horn M, Nienhaus K, Nienhaus GU
11058 - 11071 Protein Folding Cooperativity and Thermodynamic Barriers of the Simplest beta-Sheet Fold: A Survey of WW Domains
Iglesias-Bexiga M, Szczepaniak M, de Medina CS, Cobos ES, Godoy-Ruiz R, Martinez JC, Munoz V, Luque I
11072 - 11082 Disorder at the Tips of a Disease-Relevant A beta 42 Amyloid Fibril: A Molecular Dynamics Study
Ilie IM, Caflisch A
11083 - 11094 Effect of Mutations on the Global and Site-Specific Stability and Folding of an Elementary Protein Structural Motif
Lai JK, Kubelka GS, Kubelka J
11095 - 11099 Testing Kinetic Identities Involving Transition-Path Properties Using Single-Molecule Folding Trajectories
Neupane K, Hoffer NQ, Woodside MT
11100 - 11107 Peroxynitrite Detoxification by Human Haptoglobin:Hemoglobin Complexes: A Comparative Study
Ascenzi P, Coletta M
11108 - 11114 Mechanism of Folding and Binding of the N-Terminal SH2 Domain from SHP2
Bonetti D, Troilo F, Toto A, Travaglini-Allocatelli C, Brunori M, Gianni S
11115 - 11125 AWSEM-IDP: A Coarse-Grained Force Field for Intrinsically Disordered Proteins
Wu H, Wolynes PG, Papoian GA
11126 - 11136 Accurate Protein-Folding Transition-Path Statistics from a Simple Free-Energy Landscape
Jacobs WM, Shakhnovich EI
11137 - 11146 Calmodulin (CaM) Activates PI3K alpha by Targeting the "Soft" CaM-Binding Motifs in Both the nSH2 and cSH2 Domains of p85 alpha
Zhang MZ, Li ZG, Wang GQ, Jang H, Sacks DB, Zhang J, Gaponenko V, Nussinov R
11147 - 11154 Instrumental Effects in the Dynamics of an Ultrafast Folding Protein under Mechanical Force
De Sancho D, Schonfelder J, Best RB, Perez-Jimenez R, Munoz V
11155 - 11165 Combined Force Ramp and Equilibrium High-Resolution Investigations Reveal Multipath Heterogeneous Unfolding of Protein G
Izadi D, Chen YJ, Whitmore ML, Slivka JD, Ching K, Lapidus LJ, Comstock MJ
11166 - 11173 Folding Mechanism of the SH3 Domain from Grb2
Troilo F, Bonetti D, Camilloni C, Toto A, Longhi S, Brunori M, Gianni S
11174 - 11185 Monte Carlo Sampling of Protein Folding by Combining an All-Atom Physics-Based Model with a Native State Bias
Wang Y, Tian PF, Boomsma W, Lindorff-Larsen K
11186 - 11194 Effect of Memory and Active Forces on Transition Path Time Distributions
Carlon E, Orland H, Sakaue T, Vanderzande C
11195 - 11205 Interface Residues That Drive Allosteric Transitions Also Control the Assembly of L-Lactate Dehydrogenase
Chen J, Thirumalai D
11206 - 11217 Measuring Solvent Hydrogen Exchange Rates by Multifrequency Excitation N-15 CEST: Application to Protein Phase Separation
Yuwen T, Bah A, Brady JP, Ferrage F, Bouvignies G, Kay LE
11218 - 11227 RNA as a Complex Polymer with Coupled Dynamics of Ions and Water in the Outer Solvation Sphere
Lammert H, Wang AL, Mohanty U, Onuchic JN
11228 - 11239 Complex Folding Landscape of Apomyoglobin at Acidic pH Revealed by Ultrafast Kinetic Analysis of Core Mutants
Mizukami T, Xu M, Fazlieva R, Bychkova VE, Roder H
11240 - 11250 Reversible Interacting-Particle Reaction Dynamics
Frohner C, Noe F
11251 - 11261 Mapping an Equilibrium Folding Intermediate of the Cytolytic Pore Toxin ClyA with Single-Molecule FRET
Dingfelder F, Benke S, Nettels D, Schuler B
11262 - 11270 Atomistic Modeling of Intrinsically Disordered Proteins Under Polyethylene Glycol Crowding: Quantitative Comparison with Experimental Data and Implication of Protein-Crowder Attraction
Nguemaha V, Qin SB, Zhou HX
11271 - 11278 Decorrelating Kinetic and Relaxation Parameters in Exchange Saturation Transfer NMR: A Case Study of N-Terminal Huntingtin Peptides Binding to Unilamellar Lipid Vesicles
Ceccon A, Clore GM, Tugarinov V
11279 - 11288 Frictional Effects on RNA Folding: Speed Limit and Kramers Turnover
Hori N, Denesyuk NA, Thirumalai D
11289 - 11294 Geometrical Description of Protein Structural Motifs
Kozak JJ, Gray HB, Wittung-Stafshede P
11295 - 11301 On the Natural Structure of Amino Acid Patterns in Families of Protein Sequences
Turjanski P, Ferreiro DU
11302 - 11310 Understanding the Twisted Structure of Amyloid Fibrils via Molecular Simulations
Lu L, Deng YX, Li XJ, Li H, Karniadakis GE
11311 - 11325 Molecular Dynamics Investigation of the Ternary Bilayer Formed by Saturated Phosphotidylcholine, Sphingomyelin, and Cholesterol
Smith AK, Klimov DK
11326 - 11337 Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography
Lolli G, Raboni S, Pasqualetto E, Benoni R, Campanini B, Ronda L, Mozzarelli A, Bettati S, Battistutta R
11338 - 11354 Theory of Diffusion-Influenced Reaction Networks
Gopich IV, Szabo A
11355 - 11362 Peptide and Protein Structure Prediction with a Simplified Continuum Solvent Model
Steinbach PJ
11363 - 11372 How the Conformations of an Internal Junction Contribute to Fold an RNA Domain
Chen YL, Sutton JL, Pollack L
11373 - 11380 Nucleotide-Dependent Dimer Association and Dissociation of the Chaperone Hsp90
Tych KM, Jahn M, Gegenfurtner F, Hechtl VK, Buchner J, Hugel T, Rief M
11381 - 11389 Microviscosity in E-coli Cells from Time-Resolved Linear Dichroism Measurements
Chen EF, Esquerra RM, Melendez PA, Chandrasekaran SS, Kliger DS
11390 - 11399 Effect of Surfactants on Surface-Induced Denaturation of Proteins: Evidence of an Orientation-Dependent Mechanism
Arsiccio A, McCarty J, Pisano R, Shea JE
11400 - 11413 Transition Path Times in Non-Markovian Activated Rate Processes
Medina E, Satija R, Makarov DE
11414 - 11430 Surveying the Energy Landscapes of A beta Fibril Polymorphism
Chen MC, Schafer NP, Wolynes PG
11431 - 11439 Adiabatic Ligand Binding in Heme Proteins: Ultrafast Kinetics of Methionine Rebinding in Ferrous Cytochrome c
Benabbas A, Champion PM
11440 - 11449 Atomic-Level Description of Protein Folding inside the GroEL Cavity
Piana S, Shaw DE
11450 - 11459 Stability Effects of Protein Mutations: The Role of Long-Range Contacts
Bigman LS, Levy Y
11460 - 11467 Occupancies in the DNA-Binding Pathways of Intrinsically Disordered Helix-Loop-Helix Leucine-Zipper Proteins
Vancraenenbroeck R, Hofmann H
11468 - 11477 Dynamics of Structural Elements of GB1 beta-Hairpin Revealed by Tryptophan-Cysteine Contact Formation Experiments
Soranno A, Cabassi F, Orselli ME, Cellmer T, Gori A, Longhi R, Buscaglia M
11478 - 11487 Origin of Internal Friction in Disordered Proteins Depends on Solvent Quality
Zheng WW, Hofmann H, Schuler B, Best RB
11488 - 11496 Dynamics of Quaternary Structure Transitions in R-State Carbonmonoxyhemoglobin Unveiled in Time-Resolved X-ray Scattering Patterns Following a Temperature Jump
Cho HS, Schotte F, Stadnytskyi V, DiChiara A, Henning R, Anfinrud P
11497 - 11507 The Sensitivity of Computational Protein Folding to Contact Map Perturbations: The Case of Ubiquitin Folding and Function
Terse VL, Gosavi S
11508 - 11518 Deprotonation of a Single Amino Acid Residue Induces Significant Stability in an alpha-Helical Heteropeptide
Jas GS, Kuczera K
11519 - 11534 Static Kinks or Flexible Hinges: Multiple Conformations of Bent DNA Bound to Integration Host Factor Revealed by Fluorescence Lifetime Measurements
Connolly M, Arra A, Zvoda V, Steinbach PJ, Rice PA, Ansari A
11535 - 11545 Amyloid Fibril Design: Limiting Structural Polymorphism in Alzheimer's A beta Protofilaments
Tywoniuk B, Yuan Y, McCartan S, Szydlowska BM, Tofoleanu F, Brooks BR, Buchete NV
11546 - 11553 Tracking DNA Synthesis with Single-Molecule Strand Displacement
Wickersham CE, Lipman EA
11554 - 11560 Kinetics of Transient Protein Complexes Determined via Diffusion-Independent Microfluidic Mixing and Fluorescence Stoichiometry
Hellenkamp B, Thurn J, Stadlmeier M, Hugel T
11561 - 11570 Kinetic Pathway of Torsional DNA Buckling
Dittmore A, Silver J, Neuman KC
11571 - 11578 Calculating Kinetic Rates and Membrane Permeability from Biased Simulations
Badaoui M, Kells A, Molteni C, Dickson CJ, Hornak V, Rosta E
11579 - 11590 Theoretical Simulation of Red Cell Sickling Upon Deoxygenation Based on the Physical Chemistry of Sickle Hemoglobin Fiber Formation
Dunkelberger EB, Metaferia B, Cellmer T, Henry ER
11591 - 11597 Water, Ions, and Hemoglobin: Effects on Allostery and Polymerization
Rotter MA, Jiang J, Ferrone SM, Ferrone FA
11598 - 11615 Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET
Ingargiola A, Weiss S, Lerner E
11616 - 11625 Protein Knotting by Active Threading of Nascent Polypeptide Chain Exiting from the Ribosome Exit Channel
Dabrowski-Tumanski P, Piejko M, Niewieczerzal S, Stasiak A, Sulkowska JI
11626 - 11639 Dispersion Correction Alleviates Dye Stacking of Single-Stranded DNA and RNA in Simulations of Single-Molecule Fluorescence Experiments
Grotz KK, Nueesch MF, Holmstrom ED, Heinz M, Stelzl LS, Schuler B, Hummer G
11640 - 11648 Heterogeneity in the Folding of Villin Headpiece Subdomain HP36
Nagarajan S, Xiao SF, Raleigh DP, Dyer RB
11649 - 11661 Cold-Adaptation Signatures in the Ligand Rebinding Kinetics to the Truncated Hemoglobin of the Antarctic Bacterium Pseudoalteromonas haloplanktis TAC125
Boubeta FM, Boechi L, Estrin D, Patrizi B, Di Donato M, Iagatti A, Giordano D, Verde C, Bruno S, Abbruzzetti S, Viappiani C
11662 - 11676 Prediction of Misfolding-Specific Epitopes in SOD1 Using Collective Coordinates
Peng XB, Cashman NR, Plotkin SS
11677 - 11694 Complete Kinetic Theory of FRET
Eilert T, Kallis E, Nagy J, Rocker C, Michaelis J
11695 - 11701 Heterogeneous Solvation in Distinctive Protein-Protein Interfaces Revealed by Molecular Dynamics Simulations
Ricci CG, McCammon JA
11702 - 11720 Three-Color Single-Molecule FRET and Fluorescence Lifetime Analysis of Fast Protein Folding
Yoo J, Louis JM, Gopich IV, Chung HS
11721 - 11730 Statistical Mechanics of Globular Oligomer Formation by Protein Molecules
Dear AJ, Saric A, Michaels TCT, Dobson CM, Knowles TPJ
11731 - 11742 Temperature-Dependent Nuclear Spin Relaxation Due to Paramagnetic Dopants Below 30 K: Relevance to DNP-Enhanced Magnetic Resonance Imaging
Chen HY, Tycko R
11743 - 11761 DNA Solvation Dynamics
Mukherjee S, Mondal S, Acharya S, Bagchi B
11762 - 11770 Cell Volume Controls Protein Stability and Compactness of the Unfolded State
Wang YH, Sukenik S, Davis CM, Gruebele M
11771 - 11783 Modeling the Self-Assembly of Protein Complexes through a Rigid-Body Rotational Reaction-Diffusion Algorithm
Johnson ME
11784 - 11791 Helical Polyampholyte Sequences Have Unique Thermodynamic Properties
Batchelor M, Paci E
11792 - 11799 Interrupted Pressure-Jump NMR Experiments Reveal Resonances of On-Pathway Protein Folding Intermediate
Charlier C, Courtney JM, Anfinrud P, Bax A
11800 - 11806 The Effect of Electrostatic Interactions on the Folding Kinetics of a 3-alpha-Helical Bundle Protein Family
Yrazu FM, Pinamonti G, Clementi C
11807 - 11816 CATS: A Tool for Clustering the Ensemble of Intrinsically Disordered Peptides on a Flat Energy Landscape
Ezerski JC, Cheung MS