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1 A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Almanzar N, Antony J, Baghel AS, Bakerman I, Bansal I, Barres BA, Beachy PA, Berdnik D, Bilen B, Brownfield D, Cain C, Chan CKF, Chen MB, Clarke MF, Conley SD, Darmanis S, Demers A, Demir K, De Morree A, du Bois TDH, Ebadi H, Espinoza FH, Fish M, Gan Q, George BM, Gillich A, Gomez-Sjoberg R, Green F, Genetiano G, Gu XY, Gulati GS, Hahn O, Haney MS, Hang Y, Harris L, He M, Hosseinzadeh S, Huang A, Huang KC, Iram T, Isobe T, Ives F, Jones RC, Kao KS, Karkanias J, Karnam G, Keller A, Kershner AM, Khoury N, Kim SK, Kiss BM, Kong W, Krasnow MA, Kumar ME, Kuo CS, Lam J, Lee DP, Lee SE, Lehallier B, Leventhal O, Li G, Li QY, Liu L, Lo A, Lu WJ, Lugo-Fagundo MF, Manjunath A, May AP, Maynard A, McGeever A, Mckay M, McNerney MW, Merrill B, Metzger RJ, Mignardi M, Min D, Nabhan AN, Neff NF, Ng KM, Nguyen PK, Noh J, Nusse R, Palovics R, Patkar R, Peng WC, Penland L, Pisco AO, Pollard K, Puccinelli R, Qi Z, Quake SR, Rando TA, Rulifson EJ, Schaum N, Segal JM, Sikandar SS, Sinha R, Sit RV, Sonnenburg J, Staehli D, Szade K, Tan M, Tan WL, Tato C, Tellez K, Dulgeroff LBT, Travaglini KJ, Tropini C, Tsui M, Waldburger L, Wang BM, van Weele LJ, Weinberg K, Weissman IL, Wosczyna MN, Wu SM, Wyss-Coray T, Xiang JY, Xue S, Yamauchi KA, Yang AC, Yerra LP, Youngyunpipatkul J, Yu B, Zanini F, Zardeneta ME, Zee A, Zhao CY, Zhang F, Zhang H, Zhang MJ, Zhou L, Zou J
Nature, 583(7817), 590, 2020
2 Ageing hallmarks exhibit organ-specific temporal signatures
Schaum N, Lehallier B, Hahn O, Palovics R, Hosseinzadeh S, Lee SE, Sit R, Lee DP, Losada PM, Zardeneta ME, Fehlmann T, Webber JT, McGeever A, Calcuttawala K, Zhang H, Berdnik D, Mathur V, Tan WL, Zee A, Tan M, Pisco AO, Karkanias J, Neff NF, Keller A, Darmanis S, Quake SR, Wyss-Coray T
Nature, 583(7817), 596, 2020
3 A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Almanzar N, Antony J, Baghel AS, Bakerman I, Bansal I, Barres BA, Beachy PA, Berdnik D, Bilen B, Brownfield D, Cain C, Chan CKF, Chen MB, Clarke MF, Conley SD, Darmanis S, Demers A, Demir K, De Morree A, du Bois TDH, Ebadi H, Espinoza FH, Fish M, Gan Q, George BM, Gillich A, Gomez-Sjoberg R, Green F, Genetiano G, Gu XY, Gulati GS, Hahn O, Haney MS, Hang Y, Harris L, He M, Hosseinzadeh S, Huang A, Huang KC, Iram T, Isobe T, Ives F, Jones RC, Kao KS, Karkanias J, Karnam G, Keller A, Kershner AM, Khoury N, Kim SK, Kiss BM, Kong W, Krasnow MA, Kumar ME, Kuo CS, Lam J, Lee DP, Lee SE, Lehallier B, Leventhal O, Li G, Li QY, Liu L, Lo A, Lu WJ, Lugo-Fagundo MF, Manjunath A, May AP, Maynard A, McGeever A, Mckay M, McNerney MW, Merrill B, Metzger RJ, Mignardi M, Min D, Nabhan AN, Neff NF, Ng KM, Nguyen PK, Noh J, Nusse R, Palovics R, Patkar R, Peng WC, Penland L, Pisco AO, Pollard K, Puccinelli R, Qi Z, Quake SR, Rando TA, Rulifson EJ, Schaum N, Segal JM, Sikandar SS, Sinha R, Sit RV, Sonnenburg J, Staehli D, Szade K, Tan M, Tan WL, Tato C, Tellez K, Dulgeroff LBT, Travaglini KJ, Tropini C, Tsui M, Waldburger L, Wang BM, van Weele LJ, Weinberg K, Weissman IL, Wosczyna MN, Wu SM, Wyss-Coray T, Xiang JY, Xue S, Yamauchi KA, Yang AC, Yerra LP, Youngyunpipatkul J, Yu B, Zanini F, Zardeneta ME, Zee A, Zhao CY, Zhang F, Zhang H, Zhang MJ, Zhou L, Zou J
Nature, 583(7817), 590, 2020
4 Ageing hallmarks exhibit organ-specific temporal signatures
Schaum N, Lehallier B, Hahn O, Palovics R, Hosseinzadeh S, Lee SE, Sit R, Lee DP, Losada PM, Zardeneta ME, Fehlmann T, Webber JT, McGeever A, Calcuttawala K, Zhang H, Berdnik D, Mathur V, Tan WL, Zee A, Tan M, Pisco AO, Karkanias J, Neff NF, Keller A, Darmanis S, Quake SR, Wyss-Coray T
Nature, 583(7817), 596, 2020
5 Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
Schaum N, Karkanias J, Neff NF, May AP, Quake SR, Wyss-Coray T, Darmanis S, Batson J, Botvinnik O, Chen MB, Chen S, Green F, Jones RC, Maynard A, Penland L, Pisco AO, Sit RV, Stanley GM, Webber JT, Zanini F, Baghel AS, Bakerman I, Bansal I, Berdnik D, Bilen B, Brownfield D, Cain C, Cho M, Cirolia G, Conley SD, Demers A, Demir K, Morree A, Divita T, Bois H, Dulgeroff LBT, Ebadi H, Espinoza FH, Fish M, Gan Q, George BM, Gillich A, Genetiano G, Gu X, Gulati GS, Hang Y, Hosseinzadeh S, Huang A, Iram T, Isobe T, Ives F, Kao KS, Karnam G, Kershner AM, Kiss BM, Kong W, Kumar ME, Lam JY, Lee DP, Lee SE, Li G, Li Q, Liu L, Lo A, Lu WJ, Manjunath A, May KL, May OL, Mckay M, Metzger RJ, Mignardi M, Min D, Nabhan AN, Ng KM, Noh J, Patkar R, Peng WC, Puccinelli R, Sikandar SS, Sinha R, Szade K, Tan W, Tato C, Tellez K, Travaglini KJ, Tropini C, Waldburger L, Weele LJ, Wosczyna MN, Xiang J, Xue S, Youngyunpipatkul J, Zardeneta ME, Zhang F, Zhou L, Castro P, Croote D, DeRisi JL, Kuo CS, Lehallier B, Nguyen PK, Tan SY, Wang BM, Yousef H, Wyss-Coray T, Beachy PA, Chan CKF, Wang BM, Weinberg K, Wu SM, Yousef H, Barres BA, Chan CKF, Clarke MF, Huang KC, Kim SK, Krasnow MA, Nusse R, Rando TA, Sonnenburg J, Weissman IL, Wu SM
Nature, 562(7727), 367, 2018
6 Complex mammalian-like haematopoietic system found in a colonial chordate
Rosental B, Kowarsky M, Seita J, Corey DM, Ishizuka KJ, Palmeri KJ, Chen SY, Sinha R, Okamoto J, Mantalas G, Manni L, Raveh T, Clarke DN, Tsai JM, Newman AM, Neff NF, Nolan GP, Quake SR, Weissman IL, Voskoboynik A
Nature, 564(7736), 425, 2018
7 Noninvasive blood tests for fetal development predict gestational age and preterm delivery
Ngo TTM, Moufarrej MN, Rasmussen MLH, Camunas-Soler J, Pan WY, Okamoto J, Neff NF, Liu KL, Wong RJ, Downes K, Tibshirani R, Shaw GM, Skotte L, Stevenson DK, Biggio JR, Elovitz MA, Melbye M, Quake SR
Science, 360(6393), 1133, 2018
8 Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq
Treutlein B, Lee QY, Camp JG, Mall M, Koh W, Shariati SAM, Sim S, Neff NF, Skotheim JM, Wernig M, Quake SR
Nature, 534(7607), 391, 2016
9 Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
Treutlein B, Brownfield DG, Wu AR, Neff NF, Mantalas GL, Espinoza FH, Desai TJ, Krasnow MA, Quake SR
Nature, 509(7500), 371, 2014
10 Identification of a Colonial Chordate Histocompatibility Gene
Voskoboynik A, Newman AM, Corey DM, Sahoo D, Pushkarev D, Neff NF, Passarelli B, Koh W, Ishizuka KJ, Palmeri KJ, Dimov IK, Keasar C, Fan HC, Mantalas GL, Sinha R, Penland L, Quake SR, Weissman IL
Science, 341(6144), 384, 2013